NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307278_10000182

Scaffold Ga0307278_10000182


Overview

Basic Information
Taxon OID3300028878 Open in IMG/M
Scaffold IDGa0307278_10000182 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31934
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (82.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016640Metagenome / Metatranscriptome245Y
F021438Metagenome / Metatranscriptome219Y
F055516Metagenome / Metatranscriptome138Y
F064480Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307278_1000018227F055516AGGMTTPTHECKPGTREHFLQVSQRQRWGTIQEYVELCRAHGYFTPAFYAKAAAHLERIHVRRMLRQVRDGRGWPTFGNIARLGPDGRPERVFLQEELFGPEEYRQIVAYHYGMARHHLFKAQTYRDHAKARYGLQLPLFDEDDGGDGGEVGDF
Ga0307278_1000018236F021438AGGAGGMNPIKSPTQLRLTHDLLERADALIAVMAADPEVRALGMPTRTAVLRLAIARGLRDLERQYQPTADASAPRPITTPHDVTPPSREGTLSRVYAGRDGEDQEPRARRNGAGVSTPAPKGS
Ga0307278_1000018238F064480AGGAGMSSTTDRVHEGHNQTAPASPDTWGPDGTMDAPPETEASCEEIER
Ga0307278_1000018240F016640GGAGMISFIFIVVVIAGAGWLAWRRWNDWRTPIRPQPSAGISPQTRAFEAFTHGNSCLAAGQWADATAAFEQARTLDPKRPYVAERLVEVVRRQHAASAPVPVAAGG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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