NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307278_10087332

Scaffold Ga0307278_10087332


Overview

Basic Information
Taxon OID3300028878 Open in IMG/M
Scaffold IDGa0307278_10087332 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1404
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038375Metagenome166N
F091756Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0307278_100873321F091756AGGMHPFRDKDLRLSITAVLLLTFVGLRPLDAKSTAKNSQQSRAFTEALAEARRLADTDAGKAYEGEFAKVVAPRLGDIVGECTKNLGPTVKFQVVFVFAADGQLERVLGLKGDAAVTCMGEKFRDLRLPAPPHGGWPVSLNINISPDNGPRLLVEALKLMETGTWEVDATISRAFKFRVHGLLAGQDFDLTIEPEGRNAFRIIAIKDQVWTSFDGSKTWKFEDAKGHALAQRFYGFVHNPLRSEAASPALQVVKQETHDGDTWMQLRAKKSDKKKGE
Ga0307278_100873322F038375AGGAMKRIVILAAALVIALSDQAFARLGQTEDQVNALFGKPIDPGKPDSDGITTNMYKNPTGEYLAVVQFLKGHSVTESYARVDSRKLSEKELSIFLQGNSAGKEWKKNPRKLAWERSDHHATAWCETVAGRPTLLIRAK
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Institute for Fundamental Biomedical Research
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