NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307300_10068016

Scaffold Ga0307300_10068016


Overview

Basic Information
Taxon OID3300028880 Open in IMG/M
Scaffold IDGa0307300_10068016 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1034
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026500Metagenome197Y
F031020Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0307300_100680162F031020GGAGGMDETGGLEPVGTASDPAADRGPTALVTAYLSALEAGDAGLAADLYAGNGLLSSADEQITGRAGIAGWHEDLLRRGRVTVTPAGQGNDTGRLEVDSAAGHHVVELALDASGRIGTARWLTPDEANMAQEERERSAT
Ga0307300_100680163F026500GGAGMTEDFGGGDVRYEGDRPVAVGDLRLAQPTRMATTSAGFWGLYEAGDEVLVVHPAGARRGPAAEIGAWLAAIAADEGRDDAERETARSFLPFLGGDDPGAADD
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