NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307277_10000346

Scaffold Ga0307277_10000346


Overview

Basic Information
Taxon OID3300028881 Open in IMG/M
Scaffold IDGa0307277_10000346 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16811
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001064Metagenome / Metatranscriptome789Y
F002124Metagenome / Metatranscriptome591Y
F008430Metagenome / Metatranscriptome333Y
F039747Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0307277_1000034611F002124GGAMAEQNEAKTKTIGYLPIDKVQTLKGWDEYLDKFTKLSALRAEAQQAKNCVRDALKERLNEEGDIDFVGEGDRVRVFRVFRRPQSRRTRTLDLSSAFREQPLAGAAEAKGDDAVVSEQAEATTPEASPTAEAVPATLDPVTERLMAIMQEKMQRPQA
Ga0307277_1000034612F001064GGAGGMALSLRDVRCDPIASRALAELMHDYTVAEEESRLVLTKKSGTLQLFLQALDDLHQWDFIQHREMLNEREGLRARSVTLEQQRESWKVRALMAEAQLLEATAKAGGEIRPRNVSDVRYASLKRFLAKRFHPDYAGAQGIEKIVRNEIFKEIWGEVERLDQAGQASRAAPARSSAAA
Ga0307277_1000034614F039747N/AMAKKLRALEPRDLALAADLDLEHAWRVEYVDRGGHGYVAIFTGQSAELRARDYYDAIERGALNSRIADAELTTASALVSLPKKRRLMR
Ga0307277_1000034617F008430GGAGGMRPANILAIALTMAASAALSLPASADRICKEDCVGPLCSKNCVHRDRDITVGRGVRDRDVTMEERRRVREPGVEIRRSRPGVDVEIER
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