NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307277_10004139

Scaffold Ga0307277_10004139


Overview

Basic Information
Taxon OID3300028881 Open in IMG/M
Scaffold IDGa0307277_10004139 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5571
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000779Metagenome / Metatranscriptome895Y
F001481Metagenome / Metatranscriptome687Y
F003919Metagenome / Metatranscriptome462Y
F016041Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0307277_100041392F000779AGGVRVMTFDDRVSLILRRLDEIERKLDDIHDELRGLETPTAIGYSARRRSHPRND
Ga0307277_100041393F003919AGCAGGMKALTMKFAPPDTSLKDYKTRRSAFLAEVIALTPNVTARAKEFRRWIDENSPHGDNDEA
Ga0307277_100041394F001481N/AMTKPKTMSKTWVDDTPSLDAEWPPRQPTTLTDLVAEARAFDWDFTYWCYASGYEAGDPDARRTFERLLAYARREGRAGLN
Ga0307277_100041395F016041AGGAGGMTDTTYVQQLRRTISGEFYFGAMCRETRRRIAISTDTSRGKQRYSQSGETIVSCNHCHKTHRLDNRDIFSFPQVGWD
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