NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307308_10072387

Scaffold Ga0307308_10072387


Overview

Basic Information
Taxon OID3300028884 Open in IMG/M
Scaffold IDGa0307308_10072387 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1629
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y
F019193Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0307308_100723871F019193N/AVAWLKDRQKPTNNASFAKELVTDPFMQEAMRVLPGLAPGDKFLLNDGKTPLSLQDAAAGIKAIYQDLLDRAWAEALARGDKLPPQGQKDIPPTVPGQQ
Ga0307308_100723873F008327AGGAGGMFPSGDSPEKVRDFYEYLNGHQETTRPIQSWHVDWLSLAWLWGFVIVLVLALLLWVKQYRTTRQRTGIYPVDRFGGWTSEAAGPATLFFLLFTVFIVAFAVALVVGHIVWGQKF
Ga0307308_100723874F002111AGAAGMIAAPPFVAYSSFTETVVAAEQWPAVYASLQALKGHVQEYPGCQGFDVFVRAEDAGDVLIHCYTTWDTPAQLEVFLERGYTFERLLADVGSGLDAKRTLVMEKVF
Ga0307308_100723875F000280AGAAGGMARDRRRLRPARPLLGYRDVGEDVRHNRSTLTRAWIILAILIVIYLAWTLTVYFLEPGLR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.