NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307308_10078135

Scaffold Ga0307308_10078135


Overview

Basic Information
Taxon OID3300028884 Open in IMG/M
Scaffold IDGa0307308_10078135 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1567
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048194Metagenome / Metatranscriptome148Y
F066682Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307308_100781353F066682GAGGMTAPPPQVPTGVRIASTLCWVVGVLTILVSLAIGIPALSSGGGSLFLGVNLTAGAAVCVAAILIRRQRRLGVLVMLLAWALPTVVAVLSHHTVRGSLLLFVALLFAGANWKHFS
Ga0307308_100781354F048194N/APARPLQSEAEGYYEPSYKFTVSDRRFTRLTLRPEPFVTFSRTGTRDEVGCGDARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARQPFYWHAPD
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