NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307304_10043202

Scaffold Ga0307304_10043202


Overview

Basic Information
Taxon OID3300028885 Open in IMG/M
Scaffold IDGa0307304_10043202 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1640
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066514Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307304_100432022F066514N/ADSAGTAPPTIGLYTYKLSGTITDATGKPVQGAVVVGRTNDRDFWTFSSPSDAAGNYTSLFHASDELDENPVPINIGVALGQVSYGGNLGTVANFARNRSASLDIQLRGGTSYTLARPDAITGAIYEGPAVGVAVANDVIKPVSARWPDTKGRFSLTLPASMRGKTISFWQNRRVFFSRFPAVPGGKVDPDTWPAKLGPGTPSRLAYLKLPRH
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