NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307304_10141690

Scaffold Ga0307304_10141690


Overview

Basic Information
Taxon OID3300028885 Open in IMG/M
Scaffold IDGa0307304_10141690 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)995
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006941Metagenome / Metatranscriptome361Y
F043697Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0307304_101416901F043697N/AVMDDLGAIQAAAAMAEGLVSPAHLLVDTFPSEQGSQRVTDATTLYKAQKKACNS
Ga0307304_101416902F006941N/AMRSFGRQCRGQGKVFVTLVRHTERQLLALGEAIETWTLETHTLLQHTASLREPQRQRLLRDLETASAAHRQITKQSQRLTQGKRLEHCKIVNAYDPTLAPILKGKSNCPAQFGRKTGILSEPASGFIFANRVPAGNPSDPSYVLPLLDTVQRAIDLVPSPHRVRVHSLGGDLGVNDAELRHALHGRGILTVGIPTTVAPINPTPSQQEVRNILNASGLQRIRTPHQVHLACASGYSRPVVESPIATLMS
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