NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256407_10061281

Scaffold Ga0256407_10061281


Overview

Basic Information
Taxon OID3300028886 Open in IMG/M
Scaffold IDGa0256407_10061281 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3613
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057003Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0256407_100612812F057003N/AMANFIDLSNLTYAGKEAQEIFSKSVYALDLRGYGIQFMDGVKGKTKIYSGEIGDAFQAYTCPFTPSGSAVLAEAFIEPVAIKVNQENCYDTFWNTFLVDQTSITLNGGIPQTFADWYFNKLQTKMAAEYQEIFWQGSTGYTGTTKKYLKVTDGVEAQLEANSGVSKISGAAFTVDNILAQTEGAISSGISKAANDGVATDNYKVFMNYADVALLKMALGKICCPNSQSIFSNYANVDGRVFIYGFEVVPTMQSRNGIIFGPANNLVLGFDTFDSHIEYKLIDMRETTGDNMFRVLAISNIAVGIVFPELFIYSRPE
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