NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247609_10001228

Scaffold Ga0247609_10001228


Overview

Basic Information
Taxon OID3300028888 Open in IMG/M
Scaffold IDGa0247609_10001228 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31520
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (21.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051210Metagenome / Metatranscriptome144Y
F071326Metagenome / Metatranscriptome122Y
F072445Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0247609_100012281F072445N/AMSTVSQLVKDNRDLMYFIDYHNTYHDDNKEFLRGDMWQFEMFNAPKIVYYPGDFIMNARLNSVNVSIDSSVNGFEKRMRGNYVLRQQTDQSTSGQLALSFVDKEDQAISYFIDDWKQKIADRDTKYSFRKDDLVCDCRLQLTNSSRIEVRELIFYNCIIMDAALDENGNKIQERI
Ga0247609_1000122822F051210N/AMNTQYLKMMQTPAMMDALIDSSVSVEDANLRSREYAKMFSRNEDMKDIFGLGNSTNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVSDMRSVIPNLGPDSYQDINTMGGFEMALTPAAITDWSATIGRKLIPGTVRVKIVKVSGGVTTKLELIDNGQGKFMAEPGIITAGTLNYLSGKVEFDLSTAMTTDTGSSITIIGKEDVTGTPCNTNGASNAHANDKRFIAKMQQIGLSTVPDMLVAEYNIAALGAMKKATGADMATFLFGKLREIYTKAINYKLVSTLEEGYAGNTLNDLDLSVNNTDIASKFHDYRSRVDLFDAYLINVETALANKAVKGVDITCYVAGPQACNQFQKGGIIGKWQRNTKMTYISDLLGWYDGIPVLRSTDIQEDTQAHKGTFYAIHKTKDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYMAQELVQKVEFTYGL
Ga0247609_100012284F071326AGGAGGMENQENMASRNLEKANKFYSIGMKNIKMLMALTGTDFIVLRPKDNSKWKNVFGGTYSSDSTLENDYSQFTTRLIVNMNEFKDVWNRNRDTLESYSPDGSLEVGDELQYTRDNITYRFKISMKQGYSEAAGVLFVYTLSSIIETINL

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