NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247609_10024399

Scaffold Ga0247609_10024399


Overview

Basic Information
Taxon OID3300028888 Open in IMG/M
Scaffold IDGa0247609_10024399 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5507
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065312Metagenome / Metatranscriptome127Y
F086398Metagenome / Metatranscriptome110Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0247609_100243994F087968AGGCGGMIKITKGMARKLYNHGEEIMIIPNRIKPDSMLASWTRKPEQEEGDFDKLCNAIFYYNCSPETGMNLAYYAKEV
Ga0247609_100243996F086398AGGAGMEMTYHVAVQRANRVKHIIEEIGLGQIIKEKYTRFNLGQAGRWVCLTDTGVTIIKSEDKLKIITMYVTTQKELVLVYGGAKNVPTFLRKKVDKNQSKYIQAGKTIWR
Ga0247609_100243998F065312AGGAGGMSKKKNPKQKTWVEVFQSERKEFPQGYCVTRIIPDKRKKKPKYKGREFEE
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