NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10000019

Scaffold Ga0308309_10000019


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10000019 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)158495
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)109 (76.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000954Metagenome / Metatranscriptome822Y
F005191Metagenome / Metatranscriptome409Y
F008829Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_10000019129F000954GGAGVRTVDRKRFLAQSVCGVLNGLTSIPMKKGFFIIVALVLAPILLVGVVALAASDWRQIGSTPGGDQVLVSSVTSQKNGLRTAWVRVEYKEPTKLPQGGPFVELRARVHFSCGAGSAVPSVANSEWFYSRDRGGKLVVSKKARRDDQFGQAAEGDFGEMAREFVCKQK
Ga0308309_1000001946F008829AGGAGMKRSILVVLAGMLLATSVLAQVKHKRRPAASAEGVSAASSAAQPQPNYEYFSILDGTPMGLELHHDTEVGTGRPVDVYEFPIELQVMNSDGNFEPEGLILDNFYTATAVDPSTAPNPNNARDCKTWNSLVLSEIRQRAPNSPTWSYVEFAVAQGARVIQTNEDGQVFWSDDIECWGSRDRFPPF
Ga0308309_1000001998F005191N/AMLPLVAKKSHTPGKHTRPPRIRVPNNEKALFTVEAKKFVGVIRRLSLTGGSAILANGPIPEGTLAEMDLGTVFGKVTAQIQFMHRGADGIALAQAFRFIDMDDVSSERFRNAARQMEKAGFSDVEEKESPLGNLASQTLNRLRDSIRSLSGAIAPGGTNKS
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