NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10000021

Scaffold Ga0308309_10000021


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10000021 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)157157
Total Scaffold Genes139 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)105 (75.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000508Metagenome / Metatranscriptome1069Y
F003398Metagenome / Metatranscriptome489Y
F004328Metagenome / Metatranscriptome443Y
F005421Metagenome / Metatranscriptome401Y
F005712Metagenome / Metatranscriptome392Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_1000002121F003398N/AMPSRKIEAPSLSEICARVRHLGYAASGRVRLYGEEFEVVSDPFPEADGIAVHVTTKKDSRIRVLQLPATVLQSVRGRVTNAA
Ga0308309_1000002140F005421AGGMRFTFRWVAWLCLSLMLWTAVAESTHNHPNKTESSSCSICVVAHSAAPTASSNPARPVFAAIGLLQEEEVIAKARLSVFGLGIRGPPAV
Ga0308309_1000002156F000508AGGGGGMMLNKVVVSLRKEYSRLEKEMGQVGKALDALGHAGGKKLKKTGRTLSKDARRRIAEAQKLRWAKVRKAAAKLVKS
Ga0308309_100000217F004328GAGMERRGVESESAKQSMSDQIPNPASIPPATPGVPAATSPPTIQRGPTINIGDEFGTAKRNLPPAKIVLLAIGGVLVIACVIAFLQRAKPQGAGSLDSVTAVEIPGQNTVLVALTFTLRNTGEKPLWVHGIRGKLVTSGGELSSDAVSAVDFDRYYQAFPALKANAQPALSPEDKLQPGQEVQKTVVVGFPVTLDAFNQRHSVSAVIQPYDQPLPVVLTK
Ga0308309_1000002182F005712AGGAGMKSIRRFTYAAVLILSALNFAPSLAFAQDAAGTFTLTHAVHWQNAIVPAGKYRFTIGPRGPSDLITLRKISGSGAGFLLMGTDAEASQPSDVSRLVVVPRSGESFVSTMQLPEFGLTLRFAVPPEIREVAQSVATSTTSATR
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