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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028906 Open in IMG/M |
| Scaffold ID | Ga0308309_10000031 Open in IMG/M |
| Source Dataset Name | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 138967 |
| Total Scaffold Genes | 125 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 82 (65.60%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001772 | Metagenome / Metatranscriptome | 637 | Y |
| F002000 | Metagenome / Metatranscriptome | 606 | Y |
| F017004 | Metagenome / Metatranscriptome | 243 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308309_10000031125 | F017004 | AGGAG | MFAQLNSGASGNQRRLLAASLVLHGLLLAWLLHSPEPQLLTPASIALGRNGKVLTQLYWPTQSPDDSTTSSSDSASERYRHQRLGHEKLAWKRTVTQAKLPMPAAPLPPSAVEDSSKMATLSKLGHGAPAGLPYGSLPGGPVYGDEIRPALPITTSDPVVYPWQRPESEGKVIIEITIDERGEIVRKTV |
| Ga0308309_1000003164 | F001772 | AGG | MRKRILLVLGGMLLAIAAYVCGSRNATIAYAGPPTQSSVPKSYGRLVAAIADQIGTGLVFEDSQGVIRFVSMTGMKEGELARYDQAPTHGGIPKSYGHLVAAVVNGEGTGLVFEDSEGVIRFVTLTGKKEGELIRN |
| Ga0308309_100000319 | F002000 | AGGAGG | MLKVVKESVHRLTSHLQIISGHLELGDYAKALGKTRETIREMHALEKSLSGLANVGMTVPQDGAVVVPHGSTVVSHEDVNVDIDRDEVRSVEKKDIRAGHGNENPKTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |