Scaffold Ga0308309_10087224

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308309_10087224

Scaffold Ga0308309_10087224

Overview

Basic Information
Taxon OID	3300028906 Open in IMG/M
Scaffold ID	Ga0308309_10087224 Open in IMG/M
Source Dataset Name	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2378
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012043	Metagenome / Metatranscriptome	284	Y
F069101	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308309_100872242	F069101	AGGA	MILFDIEADLYGPPSNEREDSNAFQARPAVSAVFDQVEPLQAQLARIASFREPIQRLGELAKVFDELRKFAMQVRDLARVLESMHNFQDRLRPVPNQFASLEALDEKLKRLCASFAEHLSELADALGPAVTLQAQLAYLAGAFDPAKVLREEFLGLAQSFALGSPAMSNGRNTAPSASKPRR
Ga0308309_100872243	F012043	GGAG	MATQRTSFEPGLAVSTVFDQIEPLQEQLAQIAVILEPIQQLSELASVFEPLREFEGRIRDLAKVLAPMHDFQHQLQQVLKQFSPLETLDQELNQLCLSFRESLSQLATALEPAAALQDRLAHLCIVFEPAKALRQEFSALAKIFERSSTDLPQ

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