NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265300_10580269

Scaffold Ga0265300_10580269


Overview

Basic Information
Taxon OID3300028914 Open in IMG/M
Scaffold IDGa0265300_10580269 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)764
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033257Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0265300_105802691F033257N/ANYYQTHKIETKVLNLITLYEKNILTEFVDQDEDKKVLFNMKNIELCKDITNTQEKMINPYDRLYQSLTEDYLATEAMKDALDGLKYLQDYYMKLTRNLTTTNVALNDLQAGKTSIKNIFGKREGNINKLTQQKEKLETDIDHLGQIIKISTFNMQNQIKNFKVKSLEHYYAQLARIKKDTESNAKLTDDLWETVCKDPNISSTD
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