NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272441_10001865

Scaffold Ga0272441_10001865


Overview

Basic Information
Taxon OID3300028920 Open in IMG/M
Scaffold IDGa0272441_10001865 Open in IMG/M
Source Dataset NameMarine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Prop-6N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44125
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (12.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Little Sippewissett Salt Marsh, Falmouth, Ma, United States

Source Dataset Sampling Location
Location NameUSA: Falmouth, Massachusetts
CoordinatesLat. (o)41.5758Long. (o)-70.6394Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F020177Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0272441_1000186589F011397N/AMHDFELLKRTYPISQFDRYCDGYDYIVKNSSEEERHEWGIKLNELQRVIKAGEKYIYQVAKEGKVFKVMCLCFENYAIIRKKIFKLDDE
Ga0272441_1000186596F020177N/AMMENVDLNNTYWDRIRGFVSELRVDARWVLRNNDDDKSYGSLRIVSHPDLPPGYLRAFFTYVISIKKKSIEEKIQTIEDYQMEMTELEVYSIDDNINTETQQYEAPYKELEEMFGVKVFE
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Institute for Fundamental Biomedical Research
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