Scaffold Ga0272441_10021823

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272441_10021823

Scaffold Ga0272441_10021823

Overview

Basic Information
Taxon OID	3300028920 Open in IMG/M
Scaffold ID	Ga0272441_10021823 Open in IMG/M
Source Dataset Name	Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Prop-6N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8393
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Little Sippewissett Salt Marsh, Falmouth, Ma, United States

Source Dataset Sampling Location
Location Name	USA: Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.5758	Long. (^o)	-70.6394	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034976	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272441_100218233	F034976	N/A	MSDSKPVRCQKCGKPLGYVTVLAKGLLHFQQPLQNVKVVAICMECSQKKNS

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