NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169607_1000089

Scaffold Ga0169607_1000089


Overview

Basic Information
Taxon OID3300029036 Open in IMG/M
Scaffold IDGa0169607_1000089 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from mother in Denmark - 265_M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49710
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (20.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location
Location NameDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060985Metagenome / Metatranscriptome132N
F089054Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0169607_100008973F089054N/AMLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELRPYLRYPNQEINKNHLHSEHIRLQIREMLQIPLRDITIIDIISLP
Ga0169607_100008978F060985N/AMIKVEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHELWHSVIKPWFQPERFGITYLWFHSGFSHIGYGEYHIIRSNRWLKTPIDRINREDYIFGYWFPTYKKYIPYRIRILKLALKDLERIKEEYGKD
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