Basic Information | |
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Taxon OID | 3300029122 Open in IMG/M |
Scaffold ID | Ga0168799_1000064 Open in IMG/M |
Source Dataset Name | Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019857-129 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 149009 |
Total Scaffold Genes | 192 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 64 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
Source Dataset Sampling Location | ||||||||
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Location Name | China: Beijing, Peking Union Medical College | |||||||
Coordinates | Lat. (o) | 39.911947 | Long. (o) | 116.4156125 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F074964 | Metagenome | 119 | N |
F090484 | Metagenome | 108 | N |
F099406 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0168799_1000064135 | F099406 | N/A | MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGGKVLESLGMVSTGVDSTYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLAGNYYSLDYFLSGKDLGGVFELKIVFVSFSDTNTGEGTSESDIEIQVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRVVTTLVNLPKDTHNIIANVASATSLSMTVSAEDFGREWQVRVNNTTGNDITQPLPTSGLFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA |
Ga0168799_1000064154 | F090484 | N/A | MDISKNPSDFFLLQIMKLQLGRNINISLRLLEQWSSDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNITGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASSMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTATDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIGNMDISIQSLPNHNTTVGNDKELEGESVFKDIPFEELSFYNDTYLYPSSQYSLL |
Ga0168799_1000064179 | F074964 | N/A | MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIETKTADWCAENVIYGGEYKPFGFSTAETLETKKSAKWLVKETDEYKATYVAVRIKSYSIRTIAKCVSEYLTHESNQQ |
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