NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0168772_105089

Scaffold Ga0168772_105089


Overview

Basic Information
Taxon OID3300029130 Open in IMG/M
Scaffold IDGa0168772_105089 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019828-35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5466
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location
Location NameChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051934Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0168772_1050894F051934N/AMGLMRRLAAAALAAVFLLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATTLGDETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLAAQENDGRLENTALIACAEEIARLSEEDRALYYYIEAFGLESGADANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYAEADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNAQVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTITIRRIQPDHSATLMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDTMEDNGLLGTLTDAILNGEAGEY
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