Scaffold Ga0168775

Basic Information
Taxon OID	3300029134 Open in IMG/M
Scaffold ID	Ga0168775_100149 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019832-40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029134 Open in IMG/M

Scaffold ID

Ga0168775_100149 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019832-40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	111036
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	82 (91.11%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

111036

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

82 (91.11%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location
Location Name	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

China: Beijing, Peking Union Medical College

Coordinates

Lat. (^o)

39.911947

Long. (^o)

116.4156125

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F045105	Metagenome	153	N
F056623	Metagenome	137	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0168775_10014953	F045105	AGGAGG	MSDKLKRVLDTNLAGLHVTDAQVTAVLRRVSQDEQRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPVGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLAFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALTREEAIDAALAIQGGSSSDVLAAEYLAGASSDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASAAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAARFTLLMQGFLPPKYCSDEVLQLQALLTGSQTDEAGLRQMETDGTLPLFNALLALEVVPDANTKKSTIDDVTAAALKSLNAHLCYENDSFLVYREDGELIWHFWLSTDMGYFLMDVRDSDLSVVGSVQIPSFSALRASILLPVRVWNTLAENLRVTIFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLRQTIYPDVPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRAMPFYTDYLDFPDDGECWFRNFVLDEVIEQVRTQMTGRYGNNI
Ga0168775_10014983	F056623	AGG	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLIRAEIPAAQKRDWKPLILPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFFDVMDADITQQRRPAIVQKADGIVQQRGLHLRKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0168775_100149

Overview

Ecosystem & Geography

Associated Families

Sequences