Scaffold Ga0169197_100052

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0169197_100052

Scaffold Ga0169197_100052

Overview

Basic Information
Taxon OID	3300029184 Open in IMG/M
Scaffold ID	Ga0169197_100052 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from infant at 4 months in Denmark - 133_4M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	120718
Total Scaffold Genes	125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	112 (89.60%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location
Location Name	Denmark
Coordinates	Lat. (^o)	55.676097	Long. (^o)	12.568337	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055715	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169197_100052125	F055715	N/A	LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNEKFCDKINELIRVGTAKILDN

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