Basic Information | |
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Taxon OID | 3300029211 Open in IMG/M |
Scaffold ID | Ga0168693_100109 Open in IMG/M |
Source Dataset Name | Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011684-90 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 92379 |
Total Scaffold Genes | 80 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 69 (86.25%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
Source Dataset Sampling Location | ||||||||
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Location Name | China: Beijing, Peking Union Medical College | |||||||
Coordinates | Lat. (o) | 39.911947 | Long. (o) | 116.4156125 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F043413 | Metagenome | 156 | N |
F055739 | Metagenome | 138 | N |
F068856 | Metagenome | 124 | N |
Protein ID | Family | RBS | Sequence |
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Ga0168693_10010920 | F068856 | AGG | MKRLTSILLALLMLVGMALAEETPDAALGDWYALNVDGTMECLTLREDGTFCYDSREGTWRKTMDGEYWLTFSRTGLLDVMASMVNSQVAEQDMTALLTENGLDVYYGSTAEGVVAHMVRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMQMTYTPDKGERLAFCTIDGLTLIPGANLGDYPEGTSYPMTFEDGILSATIQMMVLVSSGTEETQEIEMDYYLTFFQTADGSLYATLRLSDVPDNPTTMFLLIPME |
Ga0168693_10010960 | F055739 | AGGAGG | MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRSPETHRSIGLNRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALAERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENEQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAHYIREQAARHIITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELSGLRIPLDGYTAVMDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGETGFTLNLSGEKGTE |
Ga0168693_10010962 | F043413 | AGGGGG | MTERELREKLQFAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECAGRPYALEIEGCGGGDFMSGMFLPDETGSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWKVEYLPDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSSYDAYANFQQVTNGAYGVDMPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE |
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