NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167475_100214

Scaffold Ga0167475_100214


Overview

Basic Information
Taxon OID3300029251 Open in IMG/M
Scaffold IDGa0167475_100214 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021233-93
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85987
Total Scaffold Genes115 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (23.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location
Location NameChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F060985Metagenome / Metatranscriptome132N
F064817Metagenome128N
F080163Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0167475_10021455F064817N/AMNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYIRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0167475_10021471F080163N/AMKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCSANQFLESISDFDKIIFVIITYMKSYFDFCKDYSKISLHVHLVQFDFTTSILIQSFYNYSHRDLSFSTKLESYVSDSEIELLQEKLDLIREEICKLMGIDPDLQKKGHEENYIFNLNIDSDNQIGFFLQATEL
Ga0167475_10021473F060985GGAMSNIDEKAKNNFTIEMRIFENYEKVRHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDSRVFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKN
Ga0167475_10021474F032312N/AMPKIKDYDEDLSAPKLLSERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
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