NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265297_10002020

Scaffold Ga0265297_10002020


Overview

Basic Information
Taxon OID3300029288 Open in IMG/M
Scaffold IDGa0265297_10002020 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43500
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (83.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046735Metagenome / Metatranscriptome151Y
F056958Metagenome / Metatranscriptome137Y
F068209Metagenome125Y
F079599Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0265297_1000202016F079599GAGGMGFEQLKNIIDFNKEQAALHPIDEGLENNLCPYDDWTLDINSKSERSCPICGRIWAE
Ga0265297_1000202020F046735AGGMKLLLNVFERLLLRNIVPQIQGWNYAHMKEARELMEGLFTEQEETDLQFEQEGTNVKWKIKKEDGTDVPQERDIPVSDGLKAKIGKFLKQLDKEEKLEMQHFTLYEKFITESLALKQG
Ga0265297_100020204F056958AGGAGMENEVNILAEEKPKSIKLADGKEYKLPPIDMTTLANIEKTMGFGLGRLQTKLENETMTTMRSLIYALLKEEQHGLDIDKVGHLITLKEMSSISTTISEIMAMS
Ga0265297_100020206F068209N/AMNTEAIVYLLRKTSLTRTEIGKLKPDQLNAIVKEVYYQESVENYRNQYSVASILAAIYNTIPQKPGHKALTAKDFLSGEPPSREGKRPDTNVEILAKQKGIILPSK
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