Basic Information | |
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Taxon OID | 3300029302 Open in IMG/M |
Scaffold ID | Ga0135227_1003462 Open in IMG/M |
Source Dataset Name | Marine harbor viral communities from the Indian Ocean - SRB3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Michigan State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 942 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Indian Ocean | |||||||
Coordinates | Lat. (o) | 3.715 | Long. (o) | 105.408333 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008925 | Metagenome | 326 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0135227_10034624 | F008925 | AGGA | MTTKTKPKINAVTLNLINKLKAIDDTINEGAWEYIHLGDIIRLQDAFQEAINYYDLKKKGGIGEYGADEGKYVQFYHSDYVCHTDPEAFDPSKVEEEEDES |
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