Scaffold Ga0307249_10282500

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307249_10282500

Scaffold Ga0307249_10282500

Overview

Basic Information
Taxon OID	3300029305 Open in IMG/M
Scaffold ID	Ga0307249_10282500 Open in IMG/M
Source Dataset Name	Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4275
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.4204	Long. (^o)	-119.6671	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076682	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307249_102825005	F076682	AGGAGG	MKRTVSVLLLLLLLVSLFPVTAFAAEEYDIGAFELPTPKAPNYFIYTDGDASEASHDDLRMIMVADPEVALLAAEYNADSEAFYEKYGLWSFEIVMQYDVSLDGEDNWQYNAQWDTEYYTGGYGDGYPYVALRSEMMEDFEFFWLTYHEGQGSETFMPYQPAIITEKYYYSDGYEEEIYSFDVENHSLYIRCRYYMEWEPLVPNEYRDSNKKEEMSPLQSQIQKRRQMLPQLRKTTQKITQQHPPVTRWVLCGA

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