Basic Information | |
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Taxon OID | 3300029305 Open in IMG/M |
Scaffold ID | Ga0307249_13670675 Open in IMG/M |
Source Dataset Name | Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples. |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 528 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium parakroppenstedtii | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 34.4204 | Long. (o) | -119.6671 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F067282 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307249_136706751 | F067282 | N/A | LIFSSCGRCSRLTMGTLGTRSGGLRKCQSPCELLGGHLGFLYRRCRALRPCVDSVPETEDSSPVLTCILGYFWSLLRGVSPRLKWGHARTLSSRAVAAVSRIPSRGSRDQWLSLEAFPLGFPTRLSHMAVPRATMVLVNPRLESGGSAGKTVFPGMA |
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