Scaffold Ga0135226_1001673

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0135226_1001673

Scaffold Ga0135226_1001673

Overview

Basic Information
Taxon OID	3300029308 Open in IMG/M
Scaffold ID	Ga0135226_1001673 Open in IMG/M
Source Dataset Name	Marine harbor viral communities from the Indian Ocean - SRB2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Michigan State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1127
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location Name	Indian Ocean
Coordinates	Lat. (^o)	3.715	Long. (^o)	105.408333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051546	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135226_10016731	F051546	GGAG	MRPDHIEDALVTFHEGQWFTWTDSKNKIYANLRLTEKVGIDGNIVDNPITELPSEEEVNAKLKELQGDRDWETIVLHEK

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