NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1000109

Scaffold Ga0183683_1000109


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000109 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50038
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (79.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020815Metagenome222N
F028349Metagenome / Metatranscriptome192Y
F032993Metagenome / Metatranscriptome178Y
F067202Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100010941F032993N/AMLRMNLFISRSVLERQMKTKKFIDSLPNMEIPQLPVSLLQHMEAMGLLPVTHEDDGINNIDVPWRSETNYFRRDVLDENNEPLF
Ga0183683_100010945F020815AGGAMRLYMNKQGEWVGTQAEAKKIKADMVEVPTDKPNLLKWLNTFTGAIDDAAKEVIDSKPDPRTVARKPHKYDFWDNIRDVAENCSLTDFNVALAVFMDRVHDIADKQKETQQ
Ga0183683_100010946F028349GAGGMEVRTYHKNGKAVQFLGYSCIDASNAAKVVMGEIGDVGYFQPRLGTNEHIYDWVYVKETTDEDLQRMLDK
Ga0183683_100010947F067202AGGAGMNTPYKKQQFKDIVISAEDLDCHTIDTIADVIQEHIIDIGLATSKTLVGFNWRLDVRVSTNNGS
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