Basic Information | |
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Taxon OID | 3300029309 Open in IMG/M |
Scaffold ID | Ga0183683_1000285 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 30159 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (13.04%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | South Pacific Ocean: TARA_100 | |||||||
Coordinates | Lat. (o) | -13.0023 | Long. (o) | -95.9759 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016832 | Metagenome / Metatranscriptome | 244 | Y |
F020903 | Metagenome / Metatranscriptome | 221 | N |
F029278 | Metagenome / Metatranscriptome | 189 | N |
F030436 | Metagenome | 185 | N |
F038672 | Metagenome | 165 | N |
F056150 | Metagenome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0183683_100028516 | F020903 | N/A | MSNQLDIFGFDVNQLEEVKINNPSTLSEVFNNIAAEMVFCLKQSVQKENLTFKGNLLESIKMPVKMFGFRLTATLFLADYYDFVNKGVKGIGGKRKSGRLKGQGWEIKAPNSPYSFKKGPRVSHIKQWARSKGLNEYAVRTSIAHKGIKPRFFFDNCMKETFFGETFDRFKSDIRVVSGDRVAKGLKEILEK |
Ga0183683_100028517 | F029278 | N/A | MNVTIPTKWKDITVGNYINLRPVLNSELTPIQRVINILAILTGEKKEVIKNISLDQYKEIKKKMSFLDTELPKELKHKRFKIGGHWYIFELKAQNLLFGEYINIMEIIEKARDNEEVIFDNLHTILTTVCRPVKRKFFVWRKIKVDAKIIRETSKNFFDNMPMTIAYPISVFFYTHLDGLTKAIKTCLMEEVERIKKELTLEMSSLKDGDGGLP |
Ga0183683_100028524 | F056150 | N/A | LNNKLIKKIENFILYIGREYNVVELEDFKQDIFILLLQKGEDFIIQLDEENSINVYKLCIYQIISERGNYRTKYYIPSYFNSIDEVETYSNSCFKDEVLNDLINSLDGLDKIMLQQLLLCSGSKQCLSKKSKIHRNTIQYKFKELANKIKSKWSLNEFYT |
Ga0183683_100028526 | F030436 | N/A | MRSTLERIAELIEEYNNTNIFNGNKLNEQLKELTSRLYHIETMRTKAHEDYEKFIHTKVSEGFSVARATNEANIEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNVQKNY |
Ga0183683_100028529 | F038672 | N/A | MNELDVILRKNKLDIMIIKASHQLEKKKDKVKQEGLETLLDILELIHELQEEIRKQYKTIAKLKYENAVSYKENAILKADFDKYKHNLLKAELESPNKDKCTK |
Ga0183683_100028540 | F016832 | N/A | LYCFYVYVYSHKLKTITMNNEIKYTTRHIYVPADKIDTLVKFQEKCRNNGHKSYSSVIIKLIEQYNKNN |
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