NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1000285

Scaffold Ga0183683_1000285


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000285 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30159
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (13.04%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016832Metagenome / Metatranscriptome244Y
F020903Metagenome / Metatranscriptome221N
F029278Metagenome / Metatranscriptome189N
F030436Metagenome185N
F038672Metagenome165N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100028516F020903N/AMSNQLDIFGFDVNQLEEVKINNPSTLSEVFNNIAAEMVFCLKQSVQKENLTFKGNLLESIKMPVKMFGFRLTATLFLADYYDFVNKGVKGIGGKRKSGRLKGQGWEIKAPNSPYSFKKGPRVSHIKQWARSKGLNEYAVRTSIAHKGIKPRFFFDNCMKETFFGETFDRFKSDIRVVSGDRVAKGLKEILEK
Ga0183683_100028517F029278N/AMNVTIPTKWKDITVGNYINLRPVLNSELTPIQRVINILAILTGEKKEVIKNISLDQYKEIKKKMSFLDTELPKELKHKRFKIGGHWYIFELKAQNLLFGEYINIMEIIEKARDNEEVIFDNLHTILTTVCRPVKRKFFVWRKIKVDAKIIRETSKNFFDNMPMTIAYPISVFFYTHLDGLTKAIKTCLMEEVERIKKELTLEMSSLKDGDGGLP
Ga0183683_100028524F056150N/ALNNKLIKKIENFILYIGREYNVVELEDFKQDIFILLLQKGEDFIIQLDEENSINVYKLCIYQIISERGNYRTKYYIPSYFNSIDEVETYSNSCFKDEVLNDLINSLDGLDKIMLQQLLLCSGSKQCLSKKSKIHRNTIQYKFKELANKIKSKWSLNEFYT
Ga0183683_100028526F030436N/AMRSTLERIAELIEEYNNTNIFNGNKLNEQLKELTSRLYHIETMRTKAHEDYEKFIHTKVSEGFSVARATNEANIEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNVQKNY
Ga0183683_100028529F038672N/AMNELDVILRKNKLDIMIIKASHQLEKKKDKVKQEGLETLLDILELIHELQEEIRKQYKTIAKLKYENAVSYKENAILKADFDKYKHNLLKAELESPNKDKCTK
Ga0183683_100028540F016832N/ALYCFYVYVYSHKLKTITMNNEIKYTTRHIYVPADKIDTLVKFQEKCRNNGHKSYSSVIIKLIEQYNKNN

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