Scaffold Ga0183683

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1000285 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029309 Open in IMG/M

Scaffold ID

Ga0183683_1000285 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30159
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (13.04%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

30159

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (13.04%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

South Pacific Ocean: TARA_100

Coordinates

Lat. (^o)

-13.0023

Long. (^o)

-95.9759

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016832	Metagenome / Metatranscriptome	244	Y
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F056150	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100028516	F020903	N/A	MSNQLDIFGFDVNQLEEVKINNPSTLSEVFNNIAAEMVFCLKQSVQKENLTFKGNLLESIKMPVKMFGFRLTATLFLADYYDFVNKGVKGIGGKRKSGRLKGQGWEIKAPNSPYSFKKGPRVSHIKQWARSKGLNEYAVRTSIAHKGIKPRFFFDNCMKETFFGETFDRFKSDIRVVSGDRVAKGLKEILEK
Ga0183683_100028517	F029278	N/A	MNVTIPTKWKDITVGNYINLRPVLNSELTPIQRVINILAILTGEKKEVIKNISLDQYKEIKKKMSFLDTELPKELKHKRFKIGGHWYIFELKAQNLLFGEYINIMEIIEKARDNEEVIFDNLHTILTTVCRPVKRKFFVWRKIKVDAKIIRETSKNFFDNMPMTIAYPISVFFYTHLDGLTKAIKTCLMEEVERIKKELTLEMSSLKDGDGGLP
Ga0183683_100028524	F056150	N/A	LNNKLIKKIENFILYIGREYNVVELEDFKQDIFILLLQKGEDFIIQLDEENSINVYKLCIYQIISERGNYRTKYYIPSYFNSIDEVETYSNSCFKDEVLNDLINSLDGLDKIMLQQLLLCSGSKQCLSKKSKIHRNTIQYKFKELANKIKSKWSLNEFYT
Ga0183683_100028526	F030436	N/A	MRSTLERIAELIEEYNNTNIFNGNKLNEQLKELTSRLYHIETMRTKAHEDYEKFIHTKVSEGFSVARATNEANIEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNVQKNY
Ga0183683_100028529	F038672	N/A	MNELDVILRKNKLDIMIIKASHQLEKKKDKVKQEGLETLLDILELIHELQEEIRKQYKTIAKLKYENAVSYKENAILKADFDKYKHNLLKAELESPNKDKCTK
Ga0183683_100028540	F016832	N/A	LYCFYVYVYSHKLKTITMNNEIKYTTRHIYVPADKIDTLVKFQEKCRNNGHKSYSSVIIKLIEQYNKNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183683_1000285

Overview

Ecosystem & Geography

Associated Families

Sequences