Basic Information | |
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Taxon OID | 3300029309 Open in IMG/M |
Scaffold ID | Ga0183683_1000520 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20086 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (84.09%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | South Pacific Ocean: TARA_100 | |||||||
Coordinates | Lat. (o) | -13.0023 | Long. (o) | -95.9759 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008925 | Metagenome | 326 | Y |
F012581 | Metagenome | 279 | N |
F023319 | Metagenome | 210 | N |
F023748 | Metagenome | 209 | Y |
F024676 | Metagenome | 205 | Y |
F054940 | Metagenome | 139 | Y |
F095588 | Metagenome | 105 | Y |
F105336 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0183683_100052011 | F023748 | GGAG | MSEYKYTYRFSEQTVDTRYYKVESNTKLTQAEMQDLAWSVEQTEGETFTCNEGKATFEGTEFGDDAQYQMEEGEEDLADD |
Ga0183683_100052013 | F023319 | GAG | MSKKIKCQKEDCSNKAYPEDMENRACNLLLCDDCYTEIRYLLADYLDINIQEIKI |
Ga0183683_100052014 | F095588 | GAG | MKYKVEIELDFNRRPSKKDVLDRLFDMLKDNKVNYKLHKYNNSLYKKVERSIKNDKYK |
Ga0183683_100052016 | F024676 | N/A | MKNVMYNKNNMYVIAMPYPNQVELPDILEEDDGKVMYFKNKTDAKKFLQNLYDERNIQIQALIDDNIEIMSVQ |
Ga0183683_100052019 | F054940 | N/A | MNLLEKEIKELIKERYYEYLEEGYESFEAMELAKRDIHETKEVEIDAYNKIYDSSFDID |
Ga0183683_10005203 | F105336 | AGGAG | MKLKQQQLNKIEQILSDLERKVEEMEQQDYMTFDLGKDLQNISYMLDVLREELKK |
Ga0183683_10005208 | F012581 | N/A | MPKFTLYAKKVYYYRKEINARDRKTAEKRGDQYESERLFIPTGEEFYITSIEENEDVNQD |
Ga0183683_10005209 | F008925 | AGGAG | MSTKTIKPTIDAVTLNLINKLKKIDDTINEGAWEYIHLGDILRLQDAFAEVISYYDLKKEGGIHEYGEHQGKYQQLWYSDYVCHTDPKAFDPSKVEEEDDDE |
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