NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1000543

Scaffold Ga0183683_1000543


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000543 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19515
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (75.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F013187Metagenome273Y
F017840Metagenome / Metatranscriptome238Y
F021207Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0183683_10005431F008925AGGAGMTTKAKPTINTVTLNLINKLKKIDDTINEGAWEYINIGDIIRLQDAFQEAISHYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE
Ga0183683_100054334F017840N/AMHNKQTTLIAGANARVMNHSTGHDTSAKPTGQGYGAARKGPGVRGPIEAQVKEEPREYKTVGE
Ga0183683_10005434F013187AGGAGMSKIYKKKPKRNTWVYIYGDECQDIWEHFGLDFPNPDDRMKLKFVKYETKDMQDG
Ga0183683_10005436F021207N/AMSKRFKQVNVQHFATLVQDIDVSKYTQKEYVDIVEEIYMSIFRHNTSGDFVVETLPNEKGNWKVHKSSATKEEVMKLINEGRVIWNKDII
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