Scaffold Ga0183683_1000605

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183683_1000605

Scaffold Ga0183683_1000605

Overview

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1000605 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18237
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (67.65%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F023319	Metagenome	210	N
F070211	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10006051	F008925	N/A	KMSTKTIKPKIDTVTLNLINKLKAIDDTINEGAWEYVHLGDIIRLQDAFHTTINHFDLKKKGGIGEHGADEGKYTQFWHSDYVCHTDPEAYDPSKVEEDDE
Ga0183683_10006054	F023319	GAGG	MSKKIKCQREGCSNKAYPEDMENRACNLLLCDDCYTEIRYLLADYLDIHIQNIKI
Ga0183683_10006058	F070211	AGGAGG	MYDPVVITMLEKNVKDLQEQLKNSHIRIKQLNEENYKLRRALGIEKDNGKNITNSSDGVWLGDAQMPDAEHLKKQSSIDKDE

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