Scaffold Ga0167331_1031061

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167331_1031061

Scaffold Ga0167331_1031061

Overview

Basic Information
Taxon OID	3300029311 Open in IMG/M
Scaffold ID	Ga0167331_1031061 Open in IMG/M
Source Dataset Name	Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP12 - Kappala-digested 113
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Gothenburg
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1257
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium 34_109	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location
Location Name	Sweden
Coordinates	Lat. (^o)	59.355554	Long. (^o)	18.227079	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021489	Metagenome / Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167331_10310612	F021489	AGGAG	MTTFERKIESTQEYNLLKLLKANSNLKRFGVEWIKLNHELCRVFATNGYAMIVADLEPNWWHDIFDGLPELTLITKLKRDEVHYFEGKELENFNYLSVFEAVGREPNYVPVMHLDLNLLRKLTDKFDDVYFVKQSGAALFMQLEGDKYPAGSYYGALMPKTISQEETADIIDALSSLATDGDIRRQWVADLREFAQE

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