NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1000883

Scaffold Ga0183748_1000883


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1000883 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19604
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (69.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002444Metagenome / Metatranscriptome558Y
F065835Metagenome / Metatranscriptome127N
F088866Metagenome109N
F105362Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100088328F105362AGGAGMSAPDPMDRDVKVMFTDHSTRDYIITASNLKEAEEVFDTIFNHMEQSITDLLKQYSVGKKTKVWVEYHIDKVQDMNEEEND
Ga0183748_10008833F065835GGAGMTDEKMESMETNEGIKGLRDKLKSVEQENKELKNVVKTSLFKDVGLDPNSGTGKMAFDLYDGKPDTAELGQWLKETYNIDTEVQQNNEVAAAKIAESDDKLTQIQQNSVAAQPTDWTQKMQEVIASGDTSVRDSLRAKLALQEELKKQ
Ga0183748_100088335F088866AGAAGMSKQKQQGTKLETFVAKMLNGSRIAEGGINDKGDVLFNWNGQEFFIECKARQSLNVTRELAKSIKKSKSQFTALVWKRLVKTDKSRRQPDGVPIIVCLTLDTFVEIVESKIGNSFYDDPFWKQLP
Ga0183748_10008839F002444AGGAGGVGILLVLKEGGSLIIDTIGNLPIDEDIDLLPDAGGAGISLAFRTIMEALSTTNTSTDTMARAIVMGDS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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