NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1001473

Scaffold Ga0183748_1001473


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1001473 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14116
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018920Metagenome232Y
F067702Metagenome125N
F076035Metagenome118N
F097265Metagenome104N
F103062Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100147314F067702GGAGGMNKVMSVCMDNFPTFQWKINIHDKECYETTVSGSFGPFNTVDIFTEGNKHVVVSEFGAEGKWDQECDDVQLQQTLEDLSQAFSYEQQRWIDLINGESPYGE
Ga0183748_100147326F076035GGAGLDTHLSNKVEGLEFVSLTEITPNQLLGHYSRSRVVVEIAKGFSILVSADQFSNKDLRWVGTQIGEA
Ga0183748_100147328F097265AGGAGMLVPEIIKKINSDKVVIKYGNDYVLLSHAPAREDGYPQWDETLAFICNEDGEVKNWTEVAGGSGMNIADVLTEISRFGIAKRGAYQ
Ga0183748_10014735F103062AGGAGMERPVRNIGDLINVMGTNHLGIILKVHEKAGQNKFYLVHDNITNKEKWHHESVIFDASCHDPNVELLSDLSG
Ga0183748_10014737F018920GAGMNYKILENTTADDFLLEMLRLGKPIECSLVGVFDEGSGKRGSRREIDLPLHRDGDYSIAKAIENSIDWVGLYCIREGEAMTLIEDKGEVKEINLKKGQAIIFDNKLCRHGRTGRVGDRLLLRVWIEDETG
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Biomedical Sciences Research Center "Alexander Fleming"
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