NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1001952

Scaffold Ga0183748_1001952


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1001952 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11698
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (79.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012581Metagenome279N
F021207Metagenome220Y
F105326Metagenome100Y
F105336Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100195223F012581AGGAGVAKYTIYAKKVYYYRKDINAQDMKSAEKRGADYEADDNAERLFEPSGEEFYITSIEENEDGR
Ga0183748_100195226F105326AGGAMGQERNLTPTQHWELHQGLWHMLGCDMQLKHKDKTTAIYVDNKAGLKYTYSTKGFIKWFPMPKEDKI
Ga0183748_100195227F021207AGGAGMSKRFKQVNVQHFATLVQEIDVSKYTQKEYVEIVEELYMGIFRHNTSGDFVVETLPNEKGNWKVHKPSATKEEVMELIKKGQVIWDKNVI
Ga0183748_100195228F105336AGGAGMKLRQQQITKAEQILNDLERKVEEMEQQDYITFDLEKDLRSLQAMLDDLREEIENE
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Institute for Fundamental Biomedical Research
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