NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1002746

Scaffold Ga0183748_1002746


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1002746 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9531
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013289Metagenome272Y
F062254Metagenome131N
F095453Metagenome105N
F104038Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100274616F095453AGGAMATKPQVNTVDFFIGLPREFKPTMTSNNSNDDGGIKTVKHLLSSNEWSFENDPDCFKKSVVMDILNDYKAP
Ga0183748_100274617F104038AGGMKIKEAKKAQSLSNKTWTMVQDVATNERKANGTMLFICKNMFDLFRDGKMQISNYFGEKINNADPMNMFFNIDGTRKTLIAKDFGQFVTQCMIPALDQNLNDFQKNHPYEFNVLTQASPVVMFLICNHTIYEKGNFLNLETDPVQFKIDWKVLKNVTSASEKDAEEVKNENVFRNSLFENFFLKSEKGKDFWTTFRGDRGLVEFVKQYFLPKKIASENVKNAVESETYKQVKKMNDLEKGVFGTTHNLTVVAEAEQGKGGNADQRLKNEVDQMMLTAEKIVDLFAKNKNPITQKALLDLHLYVVDALQSENFEEYFKTKTKAKVEFKPQVNKTTFDTSTGDFWKYVSQI
Ga0183748_10027464F062254GAGMTPTELSHKISSILEKELDGKVFEHKTYVNGMGCQFTFYLKGKSFVVDLWDEDVVYDSKE
Ga0183748_10027465F013289GAGGMILDDEYITKDMLTKDSYKGNYYANKNAVMYDLQNGKQNVVCFCDNIYTAQGIVEGLNLLDKLEADGVELKK
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