NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1003552

Scaffold Ga0183748_1003552


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1003552 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8052
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (86.96%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013187Metagenome273Y
F021207Metagenome220Y
F023748Metagenome209Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100355213F023748AGGAGGMSKEYKYTYRFSEQTVDTRYYKVESNKKLTYHEMQDIAWSVEMKEGETYKDKDGKATFEGTEYGDDAQYQMEEGEEDLIDD
Ga0183748_100355219F013187AGGAGMPTKSKIKKKPKKNTWVYIYGDEMIEIWEHFGIDFPNPDDRMKLKFVKYETKEMQDG
Ga0183748_100355221F105326AGGAMGQERNLTPTQHWELHQGLWHMLGCDMQLKYKDKTTAIYVDNKAKLKYTYSTKGFIKWFPISKEN
Ga0183748_100355222F021207AGGAGMSKRFKQVNVQHFATLVQEIDVSKYTQKEYVKIVEELYMGIFRHNTDGDFVVETLPNEKGNWKVHKPSATKEEVMELIKKGQVIWDKNVI
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