NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1005275

Scaffold Ga0183748_1005275


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1005275 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6177
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061346Metagenome132Y
F063696Metagenome129N
F104986Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100527521F104986AGGAGMSRGLTQEQKDYLDKVMKEYRQRTGTAMGSVRRMSNQDYEHVLEMNDFESIYQEVNMYLFDNRDRRYDLHRKYIPLKDRVGLD
Ga0183748_100527523F063696AGGAGMEDRSFQLEGKAEHTEDDNSNVQRFHIRPNRISQLWWKAQRLVKLADVQNQLSYEAFTEGTNAVWRALAEEQGLDINDKSLYNEPSTQIPVDEHGNELAVETEAGVQYKMDLDNGQS
Ga0183748_10052759F061346GGAGMDFSEYKPKKELADKYEKIGEWCCDECGFDQVYIGDGRMVCGELDCESLFGNNDTQEHMXXXXNDLNGHQVEERINEFDQRLFNIIMSGDAEKKIEDLIDSYKGSWAYATNDQLIEELEQVYRNGVKGLTQMDYHEIIREWNEYQVEDEKDYGDRI
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