NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1005772

Scaffold Ga0183748_1005772


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1005772 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5790
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004549Metagenome / Metatranscriptome433Y
F073582Metagenome / Metatranscriptome120N
F100990Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100577210F100990N/AMPMLQNKIKVVREQIKMGKNYDYTHIFDGVYAPVTEYNPLPMTEQLFWNRVGWLEQAMIRAENFEFRLLWFNKLQELMRLQP
Ga0183748_10057723F073582AGGAGMTVLKKDYEAVFKEGFKLGTRLARAKINLMRANDSRMINDEPMMKHYQEYAETWTKLAKNCGRKFTPPVAHSLSQPTIDLGDVELLNHKYDDKPEDEDGYQEVQVGGSGR
Ga0183748_10057724F004549N/AMKMDIKKFKSVAVAVETYKILKKLAALDDRSAGMEITYLVKQEARKRKIDAKT
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Institute for Fundamental Biomedical Research
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