NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1014112

Scaffold Ga0183748_1014112


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1014112 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3118
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034959Metagenome / Metatranscriptome173Y
F049045Metagenome / Metatranscriptome147Y
F082798Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0183748_10141124F049045AGAAGGMTVAELKEKLSYFDDDEQILFYYLKDNILTNALLEDINSYGMGIEFTIQDQHEFIKENS
Ga0183748_10141127F034959GGAGGMKIEVNKEQLELLKYAILWYECNDENEERVCEELEQKLYNAQEQDLLRSFTNMGGLN
Ga0183748_10141129F082798N/AMSELSALKQAQYHLKELEKHIKENKWYGHLYSHLAAVEGELQRQVETLEGTKVKIADNSAVGEIPETERLYNVLEEQTNGFFPPDNSYTSLSRVVASQKYESLLSQGVSPDSIKIVRVK
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