NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1014918

Scaffold Ga0183748_1014918


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1014918 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2994
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020546Metagenome / Metatranscriptome223Y
F024809Metagenome204Y
F036270Metagenome170Y
F038719Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_101491811F038719GGAGMDSKTRDKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDQYQFGVTKKIMNDASARQSNDMWG
Ga0183748_101491813F024809N/AMNYSQKVLFDDWISKCPIDNVQVQEPVSMVRTEFGKWDYLIKVYLTIDKEDWEQNQTPPGFSENSENSDDFDKKQGSTRL
Ga0183748_10149182F036270GGAGGMHIESTDKQGVFKACKEGHKLLELINDMGWDYDRFSSSGQETYDKICVILGTVEEDKNET
Ga0183748_10149186F020546AGGAGMYKTTNLKPDPNEDYKIKEIYIKIKGNQVLCNDYGDDLTKLIDDLGWDYQRMSSSGREIYDQICHLLNTVPENEVYMEI
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