NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1017162

Scaffold Ga0183748_1017162


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1017162 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2692
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098080Metagenome104Y
F099889Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0183748_10171622F099889GGAGGMTKQEFKQFCIDNNLRYKKDGCGDPISPSRKGLKTDQIYWTGEEELGIYAERETQKKFTFLKQKLVREYGLRLNQEGDTDATFIATKEQALKVASFLGCAKNAVSQETRDKMSRLLKERLYNG
Ga0183748_10171623F098080N/AMGKLSKKLGRKKQLDAKKEAEDRLVRQAGMFSLRPDACSICSKPFDKDSREMAMTWRVIVSEEKKKVTLICPECQEKIDEGMKKVFGGNDDEAGV
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Institute for Fundamental Biomedical Research
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