NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1022909

Scaffold Ga0183748_1022909


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1022909 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2167
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036270Metagenome170Y
F062820Metagenome / Metatranscriptome130N
F080142Metagenome115Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0183748_102290910F089953AGGAGGMEDLINEEILENIYEGYEIYKVTLDVLFEDLNGRVQNVADYEDEVIKYAIRERSCFADQDLKLVRHNDMSFFPTLEDAQEALSEIVQKRFEEKAQ
Ga0183748_10229094F080142GGAGMMKVGAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNEYEYEVWSYNDALQKIKNLVQQVEGNQ
Ga0183748_10229097F036270GGAGGMHIESTDKQGVFKACEQGHKLLELITDMGWDYDRFSSSGQETYDKICVILGTVEEDKNEN
Ga0183748_10229099F062820AGGAGMTTSTWKHIDIGSLCVHCGKDTAFGHSDMLFVDRIPADADLLDDDDNTIGTKEGYACRECIYVDEDDFFHEDNISN
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