NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1045511

Scaffold Ga0183748_1045511


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1045511 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1283
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004336Metagenome443Y
F010572Metagenome302N

Sequences

Protein IDFamilyRBSSequence
Ga0183748_10455111F004336N/ALFSTGRYPSTMGAGGQQDVEFCRYLEWVWFKRCVWLIGICFAFGGIGLYVGYYYDEVVKDYGMTIWGVAWLYNGFLMFVLAVSVILSAIKALVVKAFVSPEVQVGQAATRTAQMMRKGGL
Ga0183748_10455113F010572GGAGGMSGYHGSPAGYMNPVAVDKIQHPDYDAKAAENATMRIVQYLYPVIKNSVEMLEALCKETDVQVPTDLADNMEFLKTVYNTQIDWHPRTMYGDEAAEELNAR
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