Scaffold Ga0183748_1048192

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183748_1048192

Scaffold Ga0183748_1048192

Overview

Basic Information
Taxon OID	3300029319 Open in IMG/M
Scaffold ID	Ga0183748_1048192 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1224
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Red Sea: TARA_032
Coordinates	Lat. (^o)	23.36	Long. (^o)	37.2183	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004325	Metagenome / Metatranscriptome	443	Y
F027869	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10481921	F027869	AGG	MDTKKAKKAVKMAEQAQDLMDLEDAMLEAAQPDLQPEDGYINPMGRIGTVPPSTYSLGNMLNGTTT
Ga0183748_10481922	F004325	N/A	MKKKKSTTEKADQFLSGLGTAGGAIGSPQLIGFGGTDIQNQVMSGNIDEYASIRMRQGDTRIEESAAMPSDLDASYLKLNLPGSPLPTNGLLAPQNIVGAQQTQDMIMSQEQMFLAQYLPAAGLSQLPVGQPPLESGKGKK

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